Whole Exome sequencing - SRA

SRX194600: Whole Exome sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 18.7M spots, 2.8G bases, 1.2Gb downloads

UUID: d339a373-e377-488b-b203-0cc2bf368bdd

Design: Whole Exome sequencing via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (LWK) Luhya in Webuye, Kenya HapMap population

Sample: Coriell GM19023

Library:

Name: Catch-169981

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

lsid: broadinstitute.org:bsp.prod.sample:3DATP

project: C470

sample_barcode: 219621.0

target_set: whole_exome_agilent_1.1_refseq_plus_3_boosters

work_request: 31672

Name	Step	Program	Version	Notes
base caller	2012-08-25 04:52:20.0	GAPipeline	RTA1.13.48	Sequencer Application 1.5.15.1

Runs: 8 runs, 18.7M spots, 2.8G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR588350	2,354,221	357.8M	161.1Mb	2012-10-13
SRR588351	2,290,854	348.2M	156.2Mb	2012-10-13
SRR588391	2,351,559	357.4M	160.4Mb	2012-10-13
SRR588403	2,305,876	350.5M	155.2Mb	2012-10-13
SRR588412	2,308,230	350.9M	155.9Mb	2012-10-13
SRR588433	2,418,068	367.5M	166.3Mb	2012-10-13
SRR588465	2,374,439	360.9M	162.1Mb	2012-10-13
SRR588541	2,310,618	351.2M	157.4Mb	2012-10-13

Supplemental Content

PREDICTED: Rattus norvegicus TLE family member 3, transcriptional corepressor (T...
PREDICTED: Rattus norvegicus TLE family member 3, transcriptional corepressor (Tle3), transcript variant X16, mRNA
gi|2678967128|ref|XM_006243220.5|

Nucleotide
PREDICTED: Hyposmocoma kahamanoa required for meiotic nuclear division protein 1...
PREDICTED: Hyposmocoma kahamanoa required for meiotic nuclear division protein 1 homolog (LOC113240691), transcript variant X3, mRNA
gi|1483650874|ref|XM_026478075.1|

Nucleotide
PREDICTED: Hyposmocoma kahamanoa ataxin-2 homolog (LOC113240681), transcript var...
PREDICTED: Hyposmocoma kahamanoa ataxin-2 homolog (LOC113240681), transcript variant X2, mRNA
gi|1483650824|ref|XM_026478051.1|

Nucleotide
Listeria monocytogenes cholesterol-dependent cytolysin listeriolysin O (hly) gen...
Listeria monocytogenes cholesterol-dependent cytolysin listeriolysin O (hly) gene, partial cds.
PopSet: 2735210262

PopSet
LOC102549347 uncharacterized LOC102549347 [Rattus norvegicus]
LOC102549347 uncharacterized LOC102549347 [Rattus norvegicus]
Gene ID:102549347

Gene

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SRA